7JUM final peptide candidates

Final filtering metrics, native-PDB hotspot numbering, and interactive AlphaFold3 complexes

Interactive final-pass complex structures

RankDesign ESMFold2
ipTM		ESMFold2
pLDDT		 AF3
ipTM		AF3
pLDDT		 AF3
iPAE		AF3 ranking
score		 LengthAntigen sequence Hotspots (original PDB) Structure
Cyclic peptide Cys residues Antibody region near peptide Chothia CDRs / hotspot side chains

Final-pass peptide structures and structure clusters

Peptide-only structures are ordered by final filtering rank and annotated with their Stage 2 structure-cluster assignments.

Final-pass peptide structures and structure clusters